Abstract
Hypercholesterolemia is an independent risk factor for cardiovascular disease and lowering circulating levels of low-density lipoprotein cholesterol (LDL-C) can prevent and reduce cardiovascular events. MicroRNA-181d (miR-181d) can reduce the levels of triglycerides and cholesterol esters in cells. However, it is not known whether miR-181d-5p can lower levels of circulating LDL-C. Here, we generated two animal models of hypercholesterolemia to analyze the potential relationship between miR-181d-5p and LDL-C. In hypercholesterolemia model mice, adeno-associated virus (AAV)-mediated liver-directed overexpression of miR-181d-5p decreased the serum levels of cholesterol and LDL-C and the levels of cholesterol and triglyceride in the liver compared with control mice. Target Scan 8.0 indicated Proprotein convertase subtilisin/kexin type 9 (PCSK9) to be a possible target gene of miR-181d-5p, which was confirmed by in vitro experiments. miR-181d-5p could directly interact with both the PCSK9 3′-UTR and promoter to inhibit PCSK9 translation and transcription. Furthermore, Dil-LDL uptake assays in PCSK9 knockdown Huh7 cells demonstrated that miR-181d-5p promotion of LDL-C absorption was dependent on PCSK9. Collectively, our findings show that miR-181d-5p targets the PCSK9 3′-UTR to inhibit PCSK9 expression and to reduce serum LDL-C. miR-181d-5p is therefore a new therapeutic target for the development of anti-hypercholesterolemia drugs.
Introduction
Hypercholesterolemia is an independent risk factor for cardiovascular disease (Trinder et al. 2020). The global burden of dyslipidemia has increased over the past 30 years (Pirillo et al. 2021). Evidence from genetic studies and prospective epidemiological cohort studies has established LDL as a causal factor in the pathophysiology of atherosclerotic cardiovascular disease (ASCVD) (Ference et al. 2017). Therefore, lowering LDL cholesterol levels is a strategy for the prevention and treatment of ASCVD (Mach et al. 2020). Current pharmacological options for lowering low-density lipoprotein cholesterol (LDL-C) include statins or ezetimibe, which inhibit cholesterol synthesis and absorption, respectively, and alirocumab/evolocumab, which promote LDL-C clearance. Statins have some specific adverse side effects on muscle and glucose hemostasis, and increase the risk of hemorrhagic stroke (Mach et al. 2018). Alirocumab/evolocumab are expensive and have the side effects of itchy injection sites and flu-like symptoms in some patients. A greater understanding of the mechanisms regulating LDL-C is therefore needed for the development of new drugs. Despite wide prescription drug use, a large portion of patients experience recurrent cardiovascular disease, and their LDL cholesterol levels fail to reach the target levels recommended in the guidelines (Wang et al. 2022).
MicroRNAs (miRNAs) regulate multiple stages of cholesterol metabolism and can be targeted with drugs to lower cholesterol (Citrin et al. 2021). Therapeutic manipulation of relevant miRNAs through miRNA mimics or inhibitors may be a practical approach to reducing elevated LDL-C levels in patients with hypercholesterolemia and may lower the risk of cardiovascular disease events (Citrin et al. 2021). Clinical trials have been conducted for miRNA-based therapies targeting miR-34 and miR-122 (Janssen et al. 2013, Zhang et al. 2019).
miR-181d potently reduces the abundance of liver fat droplets by approximately 60% and reduces levels of cell triglycerides and cholesterol esters (Whittaker et al. 2010). Furthermore, miR-181d levels are decreased in the plasma and adipose tissue of obese people (Abu-Farha et al. 2019). However, no relationship between miR-181d and LDL-C has been reported.
Here, we found a reduced expression of miR-181d-5p through siRNA omics analysis of high-cholesterol mouse and hamster models. We found that miR-181d-5p can reduce the increase in plasma LDL-C induced by a high-cholesterol diet in mice. We also suggest a potential molecular mechanism for the effect of miR-181d-5p on LDL-C through the regulation of proprotein convertase subtilisin/kexin type 9 (PCSK9).
Materials and methods
Animal experiments
All animal experiments complied with the Institutional Animal Care and Use Committee of Capital Medical University (Beijing, China). The animal research was approved by the Animal Protection and Utilization Institutional Committee of Capital Medical University. The mice were housed at 27°C in a light–darkness cycle controlled environment, with free access to water and standard mouse food or high-cholesterol food.
Hypercholesterolemia mouse model
Eight-week-old male C57BL/6J mice were purchased from Beijing Weishanglide Boitecknowledge Co., Ltd (Beijing, China). Normal chow diet (chow) mice were fed a regular diet and water (n = 6). The high-cholesterol diet (HCD) mice were fed a high-cholesterol diet (D12108C, 1.25% cholesterol) for 2 weeks (n = 6), during which their food intake was recorded. At the end of this period, all mice were euthanized and their body and liver masses were recorded. Liver tissues were dissected, cut into small pieces, and stored at −80°C.
Hypercholesterolemia hamster model
Six-week-old male Syrian golden hamsters were purchased from Beijing Weitonglihua Experimental Animal Technology Co., Ltd. Normal control group (chow) hamsters were fed normal feed and water. HCD hamsters were fed a high-cholesterol diet (Cat# C11953, 0.5% cholesterol, 23% fat) for 4 weeks. The hamsters were then euthanized after fasting for 4 h, and livers and sera were collected.
miR-181d-5p-overexpressing HCD mouse model
Eight-week-old male C57BL/6J mice were purchased from Beijing Weishang Lide Biotechnology Co., Ltd. After 2 weeks of feeding on a high-cholesterol diet (D12108C, 1.25% cholesterol), mice were injected with 200 µL of AAV at a concentration of 1×1012 titers/mL (μg/mL) through the tail vein. The control group (n = 6) was injected with the same amount of control virus. Mice in both groups continued to be fed the HCD for 2 weeks and were then killed after fasting for 4 h. Livers and sera were collected for subsequent analysis.
Cell culture
Huh7 cells were cultured in Dulbecco’s modified Eagle’s medium (Gibco) containing 10% fetal bovine serum, 2 mM l-glutamine, penicillin 100 μg/mL, and streptomycin sulfate 100 μg/mL in a 5% CO2 incubator at 37°C. 293T cells were cultured in Dulbecco’s modified Eagle’s medium (Gibco) containing 10% fetal bovine serum (Gibco) and 1% antifungal antibiotic (Thermo Fisher Scientific) in a 5% CO2 incubator at 37°C.
Transfection of miR mimics and anti-miRs. The miR mimics and anti-miRs were purchased from Shanghai Genechem Co., Ltd. Huh7 cells at 50%–70% confluency were transfected with 10 µL pre-miR or anti-miR using HiTransG A (Shanghai Genechem Co., Ltd.) in Opti-MEM medium for 16 h. The medium was then changed to a complete growth medium. At 48 h after transfection, cells were lysed. Equal amounts of miRNA Mimic Negative Control #1 (Pre-Ctrl) or anti-miR miRNA Inhibitor Negative Control #1 (Anti-Ctrl) were used as controls for miR mimic or anti-miR experiments, respectively.
Western blot analysis
Protein samples were extracted from mouse liver tissue lysates and Huh7 cells. In total, 20 mg samples of liver tissue were lysed in RIPA buffer (Solarbio, Beijing, China) by ultrasonication. After centrifugation at 13,400 g for 20 min, the supernatants were collected, and the protein content was analyzed by western blotting. Proteins were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis and then transferred onto polyvinylidene difluoride membranes. The membranes were blocked using 5% skimmed milk and then sequentially incubated with appropriate primary and secondary antibodies. The primary antibodies used were an anti-LDLR polyclonal antibody and an anti-PCSK9 polyclonal antibody (all from Cohesion Biosciences, London, UK).
Real-time quantitative PCR
Real-time polymerase chain reactions were performed to quantify specific mRNAs. RNA was isolated from liver samples using Trizol (Life Technologies, Thermo Fisher Scientific) and converted to cDNA using a reverse transcription kit purchased from Thermo Fisher Scientific. RT-PCR was performed using the SYBR green method on a real-time PCR system. The relative abundance of each mRNA species was evaluated using the 2−ΔΔCT method. The primer sequences used were as follows: LDLR, forward 5′-CTGTAGGGGTCTTTACGTGTTC-3′, reverse 5′-GTTTTCCTCGTCAGATTTGTCC-3′; PCSK9, forward 5′-AGCAGCCAGGTGGAGGTGTATC-3′, reverse 5′ -CTTGCTCGCCTGTCTGTGGAAG-3′; GAPDH, forward 5′-GGTGAAGGTCGGAGTCAACG-3′, reverse 5′-CAAAGTTGTCATGGATGHACC-3′; mGAPDH, forward 5′-CGTGCCGCCTGGAGAAACC-3′, reverse 5′-TGGAAGAGTG GGAGTTGCTGTTG-3′.
Liver histology
Liver samples were fixed in 4% paraformaldehyde for at least 24 h, snap-frozen and embedded in an OCT compound. Eight micron frozen sections were prepared and stained with oil red O.
ELISA
ELISAs (Proteintech) were conducted according to the manufacturer’s instructions. Briefly, mouse plasma was incubated with assay diluent for 2 h at room temperature. After washing four times, PCSK9 conjugate was added to each well. After incubation for 2 h, wells were washed and substrate solution was then added. After 30 min at room temperature, stop solution was added and incubated for 30 min. The optical density of each well was determined at a wavelength of 450 nm.
Dil-LDL uptake assay
Huh7 cells were incubated with serum-free minimum essential medium (MEM) containing 1% antibiotic–antimycotic and fluorescent-tagged LDL (Dil-LDL, 30 ng/mL) for 4 h. The medium was then changed to MEM containing 10% fetal bovine serum, 1% antibiotic-antimycotic, and DAPI for 5 min. After washing with PBS and fixing in 4% paraformaldehyde, the fluorescence in cells was photographed and quantified using the PerkinElmer Operetta CLS imaging system.
Luciferase assay
The human PCSK9 3′-UTR containing the putative miR-181d-5p binding site was subcloned into the pMIR-REPORT vector (Ambion) to generate the pMIR-Luc-PCSK9-3′-UTR WT reporter (Luc-PCSK9 (WT)). Then the CGG to GCC mutation in the miR-181d-5p binding seed sequence of the PCSK9 3′-UTR was introduced into the Luc-PCSK9 (WT) plasmid using the QuikChange Lightning Multi Site-Directed Mutagenesis Kit (Agilent Technologies). Renilla luciferase plasmid (pRL-TK) was used as the transfection control. Luc-PCSK9 (MT), and control pRL-TK plasmids were cotransfected into Huh7 cells using Lipofectamine 3000 (Invitrogen). At 24 h after transfection, cells were lysed and luciferase activity was measured using a Dual-Glo Luciferase Reporter Assay Kit (Promega).
Statistical analysis
The results of in vitro experiments are presented as the mean ± s.d. and the data from in vivo experiments are presented as the mean ± s.e.m. Experiments with two groups were compared by the two-tailed Student’s t-test for parametric data or the Mann–Whitney U test for nonparametric data. Experiments with more than two groups were compared by one-way ANOVA with Bonferroni’s post hoc test for parametric data or a Kruskal–Wallis test with Dunn’s multiple comparisons for nonparametric data. All statistical analyses were performed with Prism version 9.0 (GraphPad Software, Inc., USA) (*P < 0.05, **P < 0.01, ***P < 0.001 as indicated).
Results
miR-181d-5p expression is decreased in hypercholesterolemia animal models and negatively correlates with LDL-C levels
We established hypercholesterolemia mouse and hamster models by feeding the animals high-cholesterol diets (HCDs) (Supplementary Fig. 1A, see the section on supplementary materials given at the end of this article). RNomics analysis of livers from HCD-fed mice and hamsters showed reduced expression of miR-181d-5p (Fig. 1A and B). To further determine the expression of miR-181d-5p in the mouse and hamster hypercholesterolemia models, we used RT-PCR to detect liver miR-181d-5p levels (Fig. 1C). The expression of miR-181d-5p in the livers of the model animals was decreased compared with that in the normal control groups (P < 0.05). The serum levels of total cholesterol (TC), LDL-C, and miR-181d-5p in the hypercholesterolemia model animals showed the opposite trend, indicating that miR-181d-5p negatively correlated with the serum levels of TC and LDL-C in the hypercholesterolemia animal models (Fig. 1D and E).
Overexpression of miR-181d-5p reduces LDL-C levels in hypercholesterolemia model mice
To further examine the link between miR-181d-5p and LDL-C, AAV-mediated liver-directed miRNA overexpression was used to investigate the effect of miR-181d-5p on LDL-C in the HCD-fed mouse model (Fig. 2A). The overexpression of miR-181d-5p did not affect the serum levels of alanine transaminase (ALT) or aspartate transaminase (AST) (Supplementary Fig. 2A). There were no apparent differences in physical appearance, behavior, food intake, body weight, liver weight, or liver weight ratio (Supplementary Fig. 2B) between the model and control animals. After overexpression of miR-181d-5p for 2 weeks, the levels of hepatic miR-181d-5p and the serum lipid profile were determined. The levels of miR-181d-5p were obviously increased (Fig. 2B and C). In addition, the liver levels of TC and triglyceride (TG) in the miR-181d-5p overexpression group were significantly decreased compared with the control group (Fig. 2E). Moreover, oil red O staining showed reduced lipid deposition in the liver of miR-181d-5p overexpression group mice (Fig. 2F).
miR-181d-5p targets PCSK9
To determine the underlying molecular mechanism by which miR-181d-5p reduces cholesterol levels, we used TargetScan8.0 and miRWALK to predict possible target genes regulated by miR-181d-5p. This analysis identified PCSK9, which is associated with the LDL-C clearance pathway. The mechanism of miRNA-mediated gene regulation is mainly post-transcriptional inhibition through binding to the 3′-UTR of target mRNAs. Bioinformatic methods were used to locate 3′-UTR binding sites of miR-181d-5p in humans and mice (Fig. 3A). To confirm whether miR-181d-5p targets the predicted PCSK9 3′-UTR binding site, luciferase reporter plasmids containing a mutated 3′-UTR miR-181d-5p binding site in human PCSK9 and the wild-type PCSK9 3′-UTR were constructed. As expected, miR-181d-5p significantly reduced wild-type PCSK9 3′-UTR luciferase reporter plasmid activity and had no effect on mutant PCSK9 3′-UTR binding site luciferase reporter plasmid activity (Fig. 3B). PCSK9 mRNA was detected by RT-PCR in the miR-181d-5p overexpression and control groups (Fig. 3C). Meanwhile, compared with the control group, the protein level of PCSK9 was decreased in the miR-181d-5p overexpression group (Fig. 3D and E). PCSK9 can promote the degradation of the low-density lipoprotein receptor (LDLR) and inhibit the reabsorption of LDL, thereby affecting serum LDL-C levels (Zhang et al. 2007). Therefore, we determined the levels of LDLR mRNA and LDLR protein in the livers of miR-181d-5p overexpression and control group mice. The LDLR mRNA level in the miR-181d-5p overexpression group was unchanged compared with the control group, while the LDLR protein level was significantly higher than that of the control group (Fig. 3C–E).
miR-181d-5p increases LDL-C uptake in hepatocytes by inhibiting PCSK9 expression
PCSK9 can destroy LDLR on the surface of hepatocytes, thereby regulating plasma LDL-C levels (Seidah & Prat 2022). To demonstrate its influence on the cell’s ability to take up LDL-C, we tested the effects of miR-181d-5p on LDLR protein and LDL-C uptake capacity in Huh7 cells. We assessed the impact of miR-181d-5p on LDLR function using a Dil-LDL uptake experiment, where the fluorescence intensity in Huh7 cells indicated their LDL-C uptake capacity. As shown in Fig. 4A, miR-181d-5p significantly enhanced the uptake of LDL-C. Conversely, transfection with anti-miR-181d-5p to inhibit miR-181d-5p reduced LDL-C uptake in Huh7 cells as expected. Overexpression of miR-181d-5p inhibited PCSK9 protein expression while up-regulating LDLR protein expression. In contrast, inhibition of miR-181d-5p decreased LDLR protein expression (Fig. 4C–E). As known, PCSK9 is not the sole regulator of LDL-C uptake (Luo et al. 2020). We silenced the basal expression of PCSK9 in Huh7 cells using si-PCSK9. Upon co-transfection with miR-181d-5p or NC, miR-181d-5p failed to inhibit LDL-C uptake following PCSK9 interference (Fig. 4F–G).
To further confirm miR-181d-5p targeting of PCSK9, we used CRISPR/Cas9 gene editing to create a lentivirus containing an miR-181d-5p target site-deleted PCSK9 3′-UTR (Supplementary Fig. 3). Transfection of Huh7 cells with this lentivirus (MT Huh7 cells) or with anti–miR-181d-5p did not significantly change the mRNA or protein levels of PCSK9 or LDLR compared with untreated cells (Fig. 5A–C).
Overexpression of miR-181d-5p in Huh7 cells significantly increased the absorption of fluorescence-labeled LDL. The miR-181d-5p-mediated increase in LDL absorption was absent in MT Huh7 cells. Transfection of anti–miR-181d-5p had the opposite effect and decreased LDL absorption in Huh7 cells but did not impact LDL binding in MT Huh7 cells (Fig. 5D).
Overexpression of miR-181d-5p has no effect on the plasma cholesterol level in LDLR knockout mice
To examine whether miR-181d-5p can regulate LDL-C in vivo by targeting pathways other than the PCSK9/LDLR pathway, we overexpressed miR-181d-5p in LDLR knockout (LDLR−/−) mice (Fig. 6A). After 2 weeks of miR-181d-5p overexpression, serum TC and TG levels remained unchanged (Fig. 6B–D) and PCSK9 protein and mRNA levels in the liver were decreased (Fig. 6E–H). In addition, we also measured TC and TG levels in liver tissue. Compared with the control group, the levels of TC and TG in liver tissue of the miR-181d-5p overexpression group remained unchanged (Fig. 6J and K). No apparent differences in physical appearance, behavior, body weight, and food intake were observed in LDLR−/− mice (Supplementary Fig. 4).
Discussion
Treatment to lower LDL-C levels may benefit patients at high risk of ASCVD (Borén et al. 2020). This study found that the expression of miR-181d-5p was increased in the livers of hypercholesterolemia model mice and hamsters. Moreover, liver miR-181d-5p levels negatively correlated with serum LDL-C levels. Exogenous administration of miR-181d-5p significantly reduced total cholesterol levels and LDL-C in hypercholesterolemia model mice. This occurred through miR-181d-5p inhibiting the expression of PCSK9, thereby increasing the expression of LDLR in hepatocytes. The binding site between miR-181d-5p and the 3′-UTR of PCSK9 mRNA was bioinformatically predicted and verified by a Luc-PCSK9 reporter gene assay. miR-181d-5p targeting of the PCSK9-3′-UTR was validated by comparing the mRNA and protein levels of PCSK9 and LDLR in Huh7 cells transfected with wild-type PCSK9-3′-UTR and binding site mutant PCSK9-3′-UTR lentiviruses. miR-181d-5p targeting of the PCSK9-3′-UTR was also verified in vivo by transfecting mice with wild-type AAV-3′-UTR or mutant AAV-3′-UTR and measuring circulating LDL-C and liver PCSK9 levels. In addition to miR-181d-5p, miR-222, miR-191, miR-224, and miR-483 can bind directly to the PCSK9 3′-UTR to inhibit its expression.
PCSK9 belongs to the proprotein convertase family (Seidah 2021). It is involved in plasma lipid regulation by binding to the LDLR on the surface of liver cells, causing LDLR degradation (Gong et al. 2017). In recent years, PCSK9 has received more and more attention as a therapeutic target for hyperlipidemia. Two PCSK9 inhibitors currently on the market, evolocumab and alirocumab, have been used to treat patients with familial hypercholesterolemia (Fitzgerald & Kiernan 2018). In addition, the PCSK9 siRNA drug, inclisiran, has been successively approved by the European Medicines Agency (EMA) and the U.S. Food and Drug Administration for the reduction of cholesterol levels in patients with primary hypercholesterolemia or mixed dyslipidemia, heterozygous familial hypercholesterolemia, and atherosclerotic cardiovascular disease (Dec et al. 2023). Inclisiran can be used in combination with statins or other lipid-lowering therapies to increase the lipid-lowering effect (Frampton 2023). These positive results also demonstrate the potential of PCSK9 gene inhibitors. PCSK9 inhibitors can increase antiviral interferon levels, thereby benefiting dengue patients. Inhibition of PCSK9 may also promote intra-tumor T-cell infiltration, thereby making tumors more responsive to immune checkpoint therapy (Liu et al. 2020). Drugs targeting miR-181d-5p, an inhibitor of PCSK9, may therefore have broad application in the treatment of hyperlipidemia, viral infection, and cancer.
miR-181d-5p can inhibit cancer cell proliferation, migration, and invasion in various cancers (Chen et al. 2018, Dong et al. 2021). In addition, miR-181d can reduce levels of triglycerides and cholesterol esters in hepatocytes (Whittaker et al. 2010), and the expression of miR-181d is decreased in plasma and adipose tissue of obese people (Abu-Farha et al. 2019) indicating that miR-181d plays an essential role in regulating lipid metabolism. miR-181d-5p therefore provides a new drug option as a PCSK9 inhibitor. In addition, miR-181d can target the ANGPTL3 3′-UTR, inhibit ANGPTL3 expression, and lipoprotein lipase activity (Abu-Farha et al. 2019). Therefore, it can play a pleiotropic role.
With the progressive understanding of small nucleic acid molecules, the clinical use of miRNAs as markers and for treatment has advanced (Vienberg et al. 2017). miRNAs are involved in the regulation of various diseases and almost all metabolic systems (Agbu & Carthew 2021) and the development of miRNA drugs based on miR-34 and miR-122 has reached phase II clinical trials (Thakral & Ghoshal 2015, Rupaimoole & Slack 2017). Currently, miRNA mimics and anti-miRNA inhibitors (Saliminejad et al. 2019) are being developed. Problems in the delivery of miRNAs limit their therapeutic effect. miRNA mimics or inhibitors are easily degraded by circulating RNases. In addition, miRNAs may be absorbed by non-target organs, leading to non-specific effects, while the extracellular matrix can prevent miRNA mimics or inhibitors from entering cells. The negative charge and relatively large molecular mass of nucleic acids also affect their entry into the cytoplasm through the phospholipid bilayer (Ho et al. 2022). Improved delivery systems are needed to overcome miRNA delivery barriers to optimize the therapeutic effects of miRNAs. miRNA delivery systems include lipid transport systems, polyethylenimine transport systems, dendritic macromolecules, and polylactide-hydroxyacetate particles (Zhang et al. 2013). In summary, our study shows a correlation between miR-181d-5p and LDL-C, and that miR-181d-5p reduces serum LDL-C levels by regulating the expression of PCSK9. These results indicate miR-181d-5p to be a new target for lipid reduction.
Limitations of the study
We only evaluated the effectiveness of miR-181d-5p delivery via AAV but did not evaluate its safety. Other delivery methods need to be further explored in the future. The PCSK9 binding site for miR-181d was only validated in cells. AAVs for in vivo validation should therefore be generated and tested.
Supplementary materials
This is linked to the online version of the paper at https://doi.org/10.1530/JOE-23-0402.
Declaration of interest
The authors declare that there is no conflict of interest that could be perceived as prejudicing the impartiality of the study reported.
Funding statement
This work was supported by the National Key Research and Development Program of China (grant nos 2021YFC2500600 and 2021YFC2500603), the National Natural Science Foundation of China (grant nos 81970224), and the Beijing Municipal Health Commission (2021-7; 2021-1854).
Author contributions
YWQ conceived and designed the study. YW and FL prepared the samples and conducted the animal experiments. YW performed the data analysis. YW and FL assisted in the statistical analysis of the metadata. YW and YWQ wrote the manuscript.
Acknowledgement
We thank Jeremy Allen, PhD, from Liwen Bianji (Edanz) (www.liwenbianji.cn) for editing a draft of the manuscript.
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